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NMR structure of antibacterial factor-2

Analyse NMR structure of antibacterial factor-2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5IX5
Type: protein
Length: 68 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Antibacterial factor-related peptide 2
UniProt: G5EC68
Pockets: 1 · best druggability 0.40

Structure

solution nmr · 1 distinct chain · 24% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Antibacterial factor-related peptide 2	protein	68	24% helix, 15% strand	G5EC68

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	79	0.40	0.78	12	empty

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

5IX5 · NMR structure of antibacterial factor-2 · the same entry in another collection · chain A against A, TM-score 1.00
G5EC68 · AlphaFold monomer V2.0 prediction for antibacterial factor-related peptide 2 (G5EC68) · a predicted model of the same protein · chain A against A, TM-score 0.74

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G5EC68
Elsewhere: RCSB PDB 5IX5 · PDBe 5IX5 · UniProt G5EC68

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