Research workbench
Crystal structure of RNA editing factor of designer pls-type PPR/9R protein in complex with MORF9/RIP9
Analyse Crystal structure of RNA editing factor of designer pls-type PPR/9R protein in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IWW
- Type
- protein
- Length
- 628 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Multiple organellar RNA editing factor 9, chloroplastic; PLS9-ppr
- UniProt
- Q9LPZ1
- Pockets
- 3 · best druggability 0.40
Structure
x-ray diffraction · 3 distinct chains · 54% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Multiple organellar RNA editing factor 9, chloroplastic | protein | 110 | 27% helix, 30% strand | Q9LPZ1 |
| C | Multiple organellar RNA editing factor 9, chloroplastic | protein | 108 | 28% helix, 27% strand | Q9LPZ1 |
| D | PLS9-ppr | protein | 300 | 74% helix, 0% strand | — |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 114 | 0.40 | 0.76 | 22 | empty |
| 2 | 79 | 0.33 | 0.74 | 18 | empty |
| 3 | 58 | 0.25 | 0.72 | 14 | empty |
Interfaces
3 interfaces between chains.
- A–D · 1120 Ų buried · 9 hydrogen bonds · protein-protein
- C–D · 1069 Ų buried · 9 hydrogen bonds · protein-protein
- B–D · 1058 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5IWW · Crystal structure of RNA editing factor of designer PLS-type PPR/9R protein in complex… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9LPZ1 · AlphaFold monomer V2.0 prediction for multiple organellar RNA editing factor 9… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LPZ1
- Elsewhere: RCSB PDB 5IWW · PDBe 5IWW · UniProt Q9LPZ1
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