Research workbench
The structure of truncated histone-like protein
Analyse The structure of truncated histone-like protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ITM
- Type
- protein
- Length
- 280 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Abrb family transcriptional regulator
- UniProt
- A0A0E3K9N8
- Pockets
- 1 · best druggability 0.68
Structure
x-ray diffraction · 3 distinct chains · 15% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Abrb family transcriptional regulator | protein | 47 | 15% helix, 45% strand | A0A0E3K9N8 |
| E | Abrb family transcriptional regulator | protein | 46 | 15% helix, 46% strand | A0A0E3K9N8 |
| F | Abrb family transcriptional regulator | protein | 46 | 15% helix, 46% strand | A0A0E3K9N8 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 725 | 0.68 | 0.76 | 76 | empty |
Interfaces
11 interfaces between chains.
- C–D · 1995 Ų buried · 34 hydrogen bonds · protein-protein
- A–B · 1983 Ų buried · 32 hydrogen bonds · protein-protein
- E–F · 1977 Ų buried · 35 hydrogen bonds · protein-protein
- B–D · 231 Ų buried · 2 hydrogen bonds · protein-protein
- B–F · 182 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 5ITM · The structure of truncated histone-like protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0E3K9N8
- Elsewhere: RCSB PDB 5ITM · PDBe 5ITM · UniProt A0A0E3K9N8
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