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2.2 ångström crystal structure of ABC transporter substrate binding protein ctap (LMO0135) from listeria monocytogenes.
Analyse 2.2 ångström crystal structure of ABC transporter substrate binding protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ISU
- Type
- protein
- Length
- 488 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LMO0135 protein
- UniProt
- Q8YAJ0
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LMO0135 protein | protein | 488 | 33% helix, 25% strand | Q8YAJ0 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 752 | 0.73 | 0.79 | 66 | empty |
| 2 | 519 | 0.65 | 0.77 | 57 | empty |
Compared structures
- 5ISU · 2.2 Angstrom Crystal Structure of ABC Transporter Substrate Binding Protein CtaP… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8YAJ0
- Elsewhere: RCSB PDB 5ISU · PDBe 5ISU · UniProt Q8YAJ0
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