Research workbench
Crystal structure of nucleoside diphosphate kinase from schistosoma mansoni is space group P6322
Analyse Crystal structure of nucleoside diphosphate kinase from schistosoma mansoni is… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IOM
- Type
- protein
- Length
- 299 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleoside diphosphate kinase
- EC
- 2.7.4.6
- UniProt
- G4VJY9
- Pockets
- 2 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoside diphosphate kinase (EC 2.7.4.6) | protein | 150 | 45% helix, 16% strand | G4VJY9 |
| B | Nucleoside diphosphate kinase (EC 2.7.4.6) | protein | 149 | 46% helix, 16% strand | G4VJY9 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 803 | 0.71 | 0.77 | 69 | empty |
| 2 | 63 | 0.33 | 0.76 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 336 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 5IOM · Crystal Structure of Nucleoside Diphosphate Kinase from Schistosoma mansoni is space… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G4VJY9
- Elsewhere: RCSB PDB 5IOM · PDBe 5IOM · UniProt G4VJY9
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