Research workbench
Racemic structure of baboon theta defensin-2
Analyse Racemic structure of baboon theta defensin-2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5INZ
- Type
- protein
- Length
- 72 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Theta defensin-2, L-peptide
- Ligands
- SO4
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 78% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Theta defensin-2, L-peptide | protein | 18 | 0% helix, 78% strand | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 6 copies · chains A, C, B, D
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
5 interfaces between chains.
- A–C · 406 Ų buried · 9 hydrogen bonds · protein-protein
- A–B · 344 Ų buried · 7 hydrogen bonds · protein-protein
- C–D · 286 Ų buried · 0 hydrogen bonds · protein-protein
- A–D · 245 Ų buried · 0 hydrogen bonds · protein-protein
- B–D · 198 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 16 d-amino, 12 disulfide (D-amino acid, disulfide).
Compared structures
- 5INZ · Racemic structure of baboon theta defensin-2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5INZ · PDBe 5INZ
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.