Research workbench
Crystal structure of bovine Fab A01
Analyse Crystal structure of bovine Fab A01 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ILT
- Type
- protein
- Length
- 484 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bovine Fab A01 light chain; Bovine Fab A01 heavy chain
- Pockets
- 4 · best druggability 0.57
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| L | Bovine Fab A01 light chain | protein | 213 | 9% helix, 51% strand | — |
| H | Bovine Fab A01 heavy chain | protein | 271 | 7% helix, 50% strand | — |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 477 | 0.57 | 0.73 | 50 | empty |
| 2 | 88 | 0.43 | 0.79 | 24 | empty |
| 3 | 60 | 0.30 | 0.75 | 16 | empty |
| 4 | 62 | 0.28 | 0.74 | 20 | empty |
Interfaces
1 interface between chains.
- L–H · 2120 Ų buried · 16 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 9 disulfide (disulfide).
Compared structures
- 5ILT · Crystal structure of bovine Fab A01 · the same entry in another collection · chain L against L, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5ILT · PDBe 5ILT
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.