Research workbench
Leucine rich repeat domain of the chlorobium tepidum roco protein
Analyse Leucine rich repeat domain of the chlorobium tepidum roco protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IL7
- Type
- protein
- Length
- 880 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rab family protein
- UniProt
- Q8KC98
- Pockets
- 7 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Rab family protein | protein | 440 | 23% helix, 15% strand | Q8KC98 |
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 889 | 0.83 | 0.85 | 118 | empty |
| 2 | 855 | 0.79 | 0.82 | 81 | empty |
| 3 | 319 | 0.62 | 0.79 | 38 | empty |
| 4 | 155 | 0.61 | 0.84 | 23 | empty |
| 5 | 72 | 0.36 | 0.77 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1822 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 5IL7 · Leucine rich repeat domain of the Chlorobium tepidum Roco protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8KC98
- Elsewhere: RCSB PDB 5IL7 · PDBe 5IL7 · UniProt Q8KC98
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