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Crystal structure of the dehydratase domain of mlnd from bacillus amyloliquefaciens
Analyse Crystal structure of the dehydratase domain of mlnd from bacillus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IL5
- Type
- protein
- Length
- 510 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mlnd
- UniProt
- A7Z473
- Pockets
- 7 · best druggability 0.61
Structure
x-ray diffraction · 2 distinct chains · 18% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mlnd | protein | 253 | 19% helix, 37% strand | A7Z473 |
| B | Mlnd | protein | 257 | 18% helix, 36% strand | A7Z473 |
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 50 | 0.61 | 0.93 | 15 | empty |
| 2 | 236 | 0.61 | 0.81 | 32 | empty |
| 3 | 76 | 0.55 | 0.86 | 18 | empty |
| 4 | 71 | 0.45 | 0.82 | 21 | empty |
| 5 | 52 | 0.41 | 0.82 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 683 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 5IL5 · Crystal structure of the dehydratase domain of MlnD from Bacillus amyloliquefaciens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7Z473
- Elsewhere: RCSB PDB 5IL5 · PDBe 5IL5 · UniProt A7Z473
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