Research workbench
Staphylococcus aureus opuca
Analyse Staphylococcus aureus opuca in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IIP
- Type
- protein
- Length
- 464 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycine BETAINE/CARNITINE/CHOLINE ABC TRANSPORTER%2C ATP- binding PROTEIN%2C putative
- UniProt
- A0A0D6GYR3
- Pockets
- 9 · best druggability 0.62
Structure
x-ray diffraction · 4 distinct chains · 36% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycine BETAINE/CARNITINE/CHOLINE ABC TRANSPORTER%2C ATP- binding PROTEIN%2C putative | protein | 116 | 33% helix, 27% strand | A0A0D6GYR3 |
| B | Glycine BETAINE/CARNITINE/CHOLINE ABC TRANSPORTER%2C ATP- binding PROTEIN%2C putative | protein | 115 | 38% helix, 25% strand | A0A0D6GYR3 |
| C | Glycine BETAINE/CARNITINE/CHOLINE ABC TRANSPORTER%2C ATP- binding PROTEIN%2C putative | protein | 116 | 35% helix, 27% strand | A0A0D6GYR3 |
| D | Glycine BETAINE/CARNITINE/CHOLINE ABC TRANSPORTER%2C ATP- binding PROTEIN%2C putative | protein | 117 | 37% helix, 26% strand | A0A0D6GYR3 |
Pockets
9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 442 | 0.62 | 0.77 | 50 | empty |
| 2 | 119 | 0.61 | 0.87 | 24 | empty |
| 3 | 178 | 0.61 | 0.83 | 26 | empty |
| 4 | 196 | 0.53 | 0.78 | 32 | empty |
| 5 | 166 | 0.47 | 0.76 | 22 | empty |
Interfaces
3 interfaces between chains.
- A–D · 894 Ų buried · 16 hydrogen bonds · protein-protein
- B–C · 769 Ų buried · 14 hydrogen bonds · protein-protein
- A–C · 113 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 5IIP · Staphylococcus aureus OpuCA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D6GYR3
- Elsewhere: RCSB PDB 5IIP · PDBe 5IIP · UniProt A0A0D6GYR3
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