Research workbench
Salmonella typhimurium virg-like (stv) protein
Analyse Salmonella typhimurium virg-like (stv) protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IHF
- Type
- protein
- Length
- 214 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Virg-like protein
- UniProt
- A0A0F6AXB3
- Ligands
- NA, PO4
- Pockets
- 2 · best druggability 0.49
Structure
x-ray diffraction · 2 distinct chains · 71% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Virg-like protein | protein | 105 | 75% helix, 0% strand | A0A0F6AXB3 |
| B | Virg-like protein | protein | 109 | 66% helix, 0% strand | A0A0F6AXB3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 79 | 0.49 | 0.82 | 23 | empty |
| 2 | 85 | 0.47 | 0.81 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1360 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 5IHF · Salmonella Typhimurium VirG-like (STV) protein · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F6AXB3
- Elsewhere: RCSB PDB 5IHF · PDBe 5IHF · UniProt A0A0F6AXB3
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