Research workbench
Human PSPC1 homodimer
Analyse Human PSPC1 homodimer in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IFN
- Type
- protein
- Length
- 509 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Paraspeckle component 1
- UniProt
- Q8WXF1
- Pockets
- 5 · best druggability 0.81
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Paraspeckle component 1 | protein | 257 | 41% helix, 23% strand | Q8WXF1 |
| B | Paraspeckle component 1 | protein | 252 | 39% helix, 24% strand | Q8WXF1 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1087 | 0.81 | 0.82 | 105 | empty |
| 2 | 185 | 0.45 | 0.74 | 23 | empty |
| 3 | 174 | 0.42 | 0.73 | 24 | empty |
| 4 | 83 | 0.37 | 0.76 | 15 | empty |
| 5 | 75 | 0.33 | 0.75 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 5228 Ų buried · 91 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8WXF1
- Elsewhere: RCSB PDB 5IFN · PDBe 5IFN · UniProt Q8WXF1
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