Research workbench
NMR structure of the 5'-terminal hairpin of the 7SK snrna
Analyse NMR structure of the 5'-terminal hairpin of the 7SK snrna in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IEM
- Type
- RNA
- Length
- 57 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 7SK snrna
- Pockets
- 3 · best druggability 0.56
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 7SK snrna | rna | 57 | — | — |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 372 | 0.56 | 0.75 | 19 | empty |
| 2 | 85 | 0.31 | 0.74 | 9 | empty |
| 3 | 56 | 0.25 | 0.73 | 11 | empty |
Compared structures
- 5IEM · NMR structure of the 5'-terminal hairpin of the 7SK snRNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5IEM · PDBe 5IEM
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