Research workbench
Crystal structure of proteus mirabilis scsc in a transitional conformation
Analyse Crystal structure of proteus mirabilis scsc in a transitional conformation in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IDR
- Type
- protein
- Length
- 1,315 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dsba-like protein
- UniProt
- C2LPE2
- Pockets
- 20 · best druggability 0.85
Structure
x-ray diffraction · 5 distinct chains · 59% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Dsba-like protein | protein | 219 | 61% helix, 11% strand | C2LPE2 |
| C | Dsba-like protein | protein | 216 | 59% helix, 12% strand | C2LPE2 |
| D | Dsba-like protein | protein | 221 | 60% helix, 10% strand | C2LPE2 |
| E | Dsba-like protein | protein | 221 | 56% helix, 12% strand | C2LPE2 |
| F | Dsba-like protein | protein | 219 | 58% helix, 11% strand | C2LPE2 |
Pockets
20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 510 | 0.85 | 0.92 | 54 | empty |
| 2 | 794 | 0.85 | 0.88 | 93 | empty |
| 3 | 492 | 0.78 | 0.86 | 65 | empty |
| 4 | 119 | 0.77 | 0.96 | 22 | empty |
| 5 | 121 | 0.63 | 0.87 | 22 | empty |
Interfaces
12 interfaces between chains.
- E–F · 2076 Ų buried · 21 hydrogen bonds · protein-protein
- B–C · 1959 Ų buried · 23 hydrogen bonds · protein-protein
- D–E · 1613 Ų buried · 22 hydrogen bonds · protein-protein
- A–B · 1553 Ų buried · 20 hydrogen bonds · protein-protein
- D–F · 1019 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 disulfide (disulfide).
Compared structures
- 5IDR · Crystal structure of Proteus Mirabilis ScsC in a transitional conformation · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C2LPE2
- Elsewhere: RCSB PDB 5IDR · PDBe 5IDR · UniProt C2LPE2
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