Research workbench
Crystal structure of a short-chain DEHYDROGENASE/REDUCTASE (SDR)FROM burkholderia vietnamiensis at 1.55 a resolution
Analyse Crystal structure of a short-chain DEHYDROGENASE/REDUCTASE (SDR)FROM… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IDQ
- Type
- protein
- Length
- 434 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Short-chain DEHYDROGENASE/REDUCTASE sdr
- UniProt
- A4JIB1
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Short-chain DEHYDROGENASE/REDUCTASE sdr | protein | 218 | 47% helix, 17% strand | A4JIB1 |
| B | Short-chain DEHYDROGENASE/REDUCTASE sdr | protein | 216 | 48% helix, 16% strand | A4JIB1 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 233 | 0.52 | 0.76 | 32 | empty |
| 2 | 215 | 0.51 | 0.76 | 32 | empty |
Interfaces
1 interface between chains.
- A–B · 1819 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 5IDQ · Crystal structure of a Short-chain dehydrogenase/reductase (SDR)from Burkholderia… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A4JIB1
- Elsewhere: RCSB PDB 5IDQ · PDBe 5IDQ · UniProt A4JIB1
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