Research workbench
Crystal structure of designed pentatricopeptide repeat protein dppr- U10 in complex with its target RNA U10
Analyse Crystal structure of designed pentatricopeptide repeat protein dppr- U10 in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5I9F
- Type
- protein + RNA
- Length
- 398 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pentatricopeptide repeat protein dppr-U10; RNA (5'…
Structure
x-ray diffraction · 2 distinct chains · 74% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pentatricopeptide repeat protein dppr-U10 | protein | 388 | 74% helix, 0% strand | — |
| F | RNA (5'- R(*GP*GP*GP*GP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*CP*CP*CP*C)-3') | rna | 10 | — | — |
Interfaces
1 interface between chains.
- A–F · 1543 Ų buried · 29 hydrogen bonds · protein-nucleic
Compared structures
- 5I9F · Crystal structure of designed pentatricopeptide repeat protein dPPR-U10 in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5I9F · PDBe 5I9F
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