Research workbench
Turnip yellow mosaic virus
Analyse Turnip yellow mosaic virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1AUY
- Type
- protein
- Length
- 541 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Turnip yellow mosaic virus
- UniProt
- P03608
- Pockets
- 4 · best druggability 0.53
Structure
x-ray diffraction · 2 distinct chains · 11% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Turnip yellow mosaic virus | protein | 163 | 14% helix, 48% strand | P03608 |
| B, C | Turnip yellow mosaic virus | protein | 189 | 8% helix, 43% strand | P03608 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 246 | 0.53 | 0.77 | 44 | empty |
| 2 | 104 | 0.37 | 0.75 | 23 | empty |
| 3 | 81 | 0.36 | 0.76 | 17 | empty |
| 4 | 68 | 0.32 | 0.75 | 14 | empty |
Interfaces
3 interfaces between chains.
- B–C · 1038 Ų buried · 16 hydrogen bonds · protein-protein
- A–C · 810 Ų buried · 13 hydrogen bonds · protein-protein
- A–B · 680 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 1AUY · Turnip yellow mosaic virus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03608
- Elsewhere: RCSB PDB 1AUY · PDBe 1AUY · UniProt P03608
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