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Crystal structure of N-terminal domain of matrix protein of thogoto virus at acidic pH.
Analyse Crystal structure of N-terminal domain of matrix protein of thogoto virus at… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5I5N
- Type
- protein
- Length
- 272 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Matrix protein
- UniProt
- Q9E781
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 66% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Matrix protein | protein | 136 | 66% helix, 0% strand | Q9E781 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.63 | 0.94 | 18 | empty |
| 2 | 51 | 0.28 | 0.75 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 880 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 5I5N · Crystal Structure of N-terminal Domain of Matrix Protein of Thogoto Virus at Acidic pH. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9E781
- Elsewhere: RCSB PDB 5I5N · PDBe 5I5N · UniProt Q9E781
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