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Shewanella denitrificans nitrous oxide reductase, reduced apo form

Analyse Shewanella denitrificans nitrous oxide reductase, reduced apo form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5I5J
Type: protein
Length: 1,060 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nitrous-oxide reductase
EC: 1.7.2.4
UniProt: Q12M27
Pockets: 10 · best druggability 0.81

Structure

x-ray diffraction · 2 distinct chains · 10% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nitrous-oxide reductase (EC 1.7.2.4)	protein	531	10% helix, 46% strand	Q12M27
B	Nitrous-oxide reductase (EC 1.7.2.4)	protein	529	10% helix, 45% strand	Q12M27

Pockets

10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	346	0.81	0.91	46	empty
2	94	0.79	0.99	18	empty
3	90	0.78	0.99	17	empty
4	55	0.73	1.00	19	empty
5	504	0.65	0.77	42	empty

Interfaces

1 interface between chains.

A–B · 3979 Å² buried · 56 hydrogen bonds · protein-protein

Compared structures

5I5J · Shewanella denitrificans nitrous oxide reductase, reduced apo form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q12M27
Elsewhere: RCSB PDB 5I5J · PDBe 5I5J · UniProt Q12M27

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