Research workbench

NMR structure of small protein B (smpb) from aquifex aeolicus

Analyse NMR structure of small protein B (smpb) from aquifex aeolicus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1K8H
Type: protein
Length: 133 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Small protein B
UniProt: O66640
Pockets: 1 · best druggability 0.73

Structure

solution nmr · 1 distinct chain · 21% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Small protein B	protein	133	21% helix, 34% strand	O66640

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	146	0.73	0.91	27	empty

Compared structures

1K8H · NMR Structure of Small Protein B (SmpB) from Aquifex aeolicus · the same entry in another collection · chain A against A, TM-score 1.00
O66640 · AlphaFold monomer V2.0 prediction for ssra-binding protein (O66640) · a predicted model of the same protein · chain A against A, TM-score 0.73

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O66640
Elsewhere: RCSB PDB 1K8H · PDBe 1K8H · UniProt O66640

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