Research workbench
The crystal structure of the D3-ASK1 complex
Analyse The crystal structure of the D3-ASK1 complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5HYW
- Type
- protein
- Length
- 1,299 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- F-BOX/LRR-repeat MAX2 homolog; SKP1-like protein 1A
- UniProt
- Q5VMP0, Q39255
- Pockets
- 20 · best druggability 0.72
Structure
x-ray diffraction · 4 distinct chains · 33% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | F-BOX/LRR-repeat MAX2 homolog | protein | 580 | 29% helix, 17% strand | Q5VMP0 |
| B | SKP1-like protein 1A | protein | 74 | 61% helix, 1% strand | Q39255 |
| C | F-BOX/LRR-repeat MAX2 homolog | protein | 575 | 29% helix, 17% strand | Q5VMP0 |
| D | SKP1-like protein 1A | protein | 70 | 66% helix, 1% strand | Q39255 |
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 80 | 0.72 | 0.96 | 28 | empty |
| 2 | 204 | 0.69 | 0.86 | 39 | empty |
| 3 | 99 | 0.69 | 0.92 | 22 | empty |
| 4 | 137 | 0.61 | 0.86 | 23 | empty |
| 5 | 172 | 0.58 | 0.82 | 25 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1936 Ų buried · 27 hydrogen bonds · protein-protein
- C–D · 1872 Ų buried · 27 hydrogen bonds · protein-protein
- A–C · 787 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 5HYW · The crystal structure of the D3-ASK1 complex · the same entry in another collection · chain D against D, TM-score 1.00
- Q5VMP0 · AlphaFold monomer V2.0 prediction for F-BOX/LRR-repeat MAX2 homolog (Q5VMP0) · a predicted model of the same protein · chain C against A, TM-score 0.99
- Q39255 · AlphaFold monomer V2.0 prediction for SKP1-like protein 1A (Q39255) · a predicted model of the same protein · chain B against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5VMP0
- Every structure of UniProt Q39255
- Elsewhere: RCSB PDB 5HYW · PDBe 5HYW · UniProt Q5VMP0 · UniProt Q39255
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