Research workbench
Structure based function annotation of a hypothetical protein MGG_01005 related to the development of rice blast fungus
Analyse Structure based function annotation of a hypothetical protein MGG_01005 related… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5HYC
- Type
- protein
- Length
- 277 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein; Cytoplasmic dynein 1 intermediate chain 2
- UniProt
- G4NCW2, G4MTS7
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 3 distinct chains · 26% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 130 | 28% helix, 30% strand | G4NCW2 |
| B | Uncharacterized protein | protein | 118 | 31% helix, 31% strand | G4NCW2 |
| C | Cytoplasmic dynein 1 intermediate chain 2 | protein | 29 | 0% helix, 24% strand | G4MTS7 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 187 | 0.60 | 0.82 | 37 | empty |
| 2 | 101 | 0.42 | 0.77 | 19 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1544 Ų buried · 43 hydrogen bonds · protein-protein
- A–C · 1136 Ų buried · 20 hydrogen bonds · protein-protein
- B–C · 337 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 5HYC · Structure based function annotation of a hypothetical protein MGG_01005 related to the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G4NCW2
- Every structure of UniProt G4MTS7
- Elsewhere: RCSB PDB 5HYC · PDBe 5HYC · UniProt G4NCW2 · UniProt G4MTS7
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