Research workbench
Reduced form of the transcriptional regulator yodb from B. subtilis
Analyse Reduced form of the transcriptional regulator yodb from B. subtilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5HS7
- Type
- protein
- Length
- 200 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hth-type transcriptional regulator yodb
- UniProt
- O34844
Structure
x-ray diffraction · 2 distinct chains · 57% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hth-type transcriptional regulator yodb | protein | 102 | 56% helix, 14% strand | O34844 |
| B | Hth-type transcriptional regulator yodb | protein | 98 | 58% helix, 14% strand | O34844 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1710 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5HS7 · Reduced form of the transcriptional regulator YodB from B. subtilis · the same entry in another collection · chain A against A, TM-score 1.00
- O34844 · AlphaFold monomer V2.0 prediction for hth-type transcriptional regulator yodb (O34844) · a predicted model of the same protein · chain B against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O34844
- Elsewhere: RCSB PDB 5HS7 · PDBe 5HS7 · UniProt O34844
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.