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Crystal structures of rida in the apo form

Analyse Crystal structures of rida in the apo form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5HP7
Type: protein
Length: 108 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Reactive intermediate deaminase a, chloroplastic
EC: 3.5.99.10
UniProt: Q94JQ4
Pockets: 1 · best druggability 0.29

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Reactive intermediate deaminase a, chloroplastic (EC 3.5.99.10)	protein	108	35% helix, 32% strand	Q94JQ4

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.29	0.75	13	empty

Compared structures

5HP7 · Crystal structures of RidA in the apo form · the same entry in another collection · chain A against A, TM-score 1.00
Q94JQ4 · AlphaFold monomer V2.0 prediction for reactive intermediate deaminase a, chloroplastic… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q94JQ4
Elsewhere: RCSB PDB 5HP7 · PDBe 5HP7 · UniProt Q94JQ4

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