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Acoustic injectors for drop-on-demand serial femtosecond crystallography

Analyse Acoustic injectors for drop-on-demand serial femtosecond crystallography in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5HL4
Type: protein
Length: 397 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ring-hydroxylating dioxygenase
UniProt: Q92ZP9
Ligands: FES, NCO, FE
Pockets: 5 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ring-hydroxylating dioxygenase	protein	397	29% helix, 25% strand	Q92ZP9

Ligands and binding sites

FES · Fe2/s2 (inorganic) cluster · ligand · chains A
NCO · Cobalt hexammine(iii) · ligand · chains A
FE · Fe (III) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	111	0.78	0.97	27	FE
2	115	0.42	0.76	17	empty
3	57	0.38	0.80	18	empty
4	72	0.34	0.76	12	empty
5	69	0.32	0.75	13	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

5HL4 · Acoustic injectors for drop-on-demand serial femtosecond crystallography · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q92ZP9
Elsewhere: RCSB PDB 5HL4 · PDBe 5HL4 · UniProt Q92ZP9

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