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Crystal structure of LTBP1 Y114A mutant in complex with leukotriene C4

Analyse Crystal structure of LTBP1 Y114A mutant in complex with leukotriene C4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5H9N
Type: protein
Length: 154 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lipocalin ai-4
UniProt: Q7YT09
Ligands: LTX
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lipocalin ai-4	protein	154	8% helix, 42% strand	Q7YT09

Ligands and binding sites

LTX · (5~{S},6~{R},7~{E},9~{E},11~{Z},14~{Z})-6-[(2~{R})-2-[[(4~{S})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-3-(2-hydroxy-2-oxoethylamino)-3-oxidanylidene-propyl]sulfanyl-5-oxidanyl-icosa-7,9,11, 14-tetraenoic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	396	0.75	0.85	44	LTX

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

5H9N · Crystal structure of LTBP1 Y114A mutant in complex with leukotriene C4 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7YT09
Elsewhere: RCSB PDB 5H9N · PDBe 5H9N · UniProt Q7YT09

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