Research workbench

Crystal structure of the apo form of human cellular retinol binding protein 1

Analyse Crystal structure of the apo form of human cellular retinol binding protein 1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5H9A
Type: protein
Length: 139 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Retinol-binding protein 1
UniProt: P09455
Pockets: 1 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Retinol-binding protein 1	protein	139	12% helix, 53% strand	P09455

Ligands and binding sites

BTB · 2-[bis-(2-hydroxy-ethyl)-amino]-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	184	0.82	0.96	33	empty

Compared structures

5H9A · Crystal structure of the Apo form of human cellular retinol binding protein 1 · the same entry in another collection · chain A against A, TM-score 1.00
P09455 · AlphaFold monomer V2.0 prediction for retinol-binding protein 1 (P09455) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P09455
Elsewhere: RCSB PDB 5H9A · PDBe 5H9A · UniProt P09455

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.