Research workbench
Crystal structure of geobacter metallireducens SMUG1 mutant N58D
Analyse Crystal structure of geobacter metallireducens SMUG1 mutant N58D in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5H99
- Type
- protein
- Length
- 457 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Geobacter metallireducens SMUG1
- UniProt
- Q39ZI0
- Pockets
- 4 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 46% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Geobacter metallireducens SMUG1 | protein | 228 | 46% helix, 13% strand | Q39ZI0 |
| B | Geobacter metallireducens SMUG1 | protein | 229 | 46% helix, 13% strand | Q39ZI0 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 70 | 0.77 | 0.99 | 22 | empty |
| 2 | 71 | 0.76 | 0.99 | 21 | empty |
| 3 | 1021 | 0.74 | 0.77 | 73 | empty |
| 4 | 62 | 0.42 | 0.81 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 238 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 5H99 · Crystal structure of Geobacter metallireducens SMUG1 mutant N58D · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q39ZI0
- Elsewhere: RCSB PDB 5H99 · PDBe 5H99 · UniProt Q39ZI0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.