Research workbench
Apo structure of immunity protein tplei of T6SS from pseudomonas aeruginosa
Analyse Apo structure of immunity protein tplei of T6SS from pseudomonas aeruginosa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5H7Z
- Type
- protein
- Length
- 598 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q9I3K3
- Ligands
- SO4
- Pockets
- 8 · best druggability 0.53
Structure
x-ray diffraction · 2 distinct chains · 19% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 296 | 20% helix, 43% strand | Q9I3K3 |
| B | Uncharacterized protein | protein | 302 | 19% helix, 42% strand | Q9I3K3 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 12 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 223 | 0.53 | 0.77 | 37 | SO4 |
| 2 | 219 | 0.52 | 0.77 | 28 | empty |
| 3 | 97 | 0.50 | 0.82 | 15 | empty |
| 4 | 68 | 0.43 | 0.81 | 15 | SO4 |
| 5 | 66 | 0.35 | 0.77 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1292 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 5H7Z · Apo structure of immunity protein TplEi of T6SS from Pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9I3K3
- Elsewhere: RCSB PDB 5H7Z · PDBe 5H7Z · UniProt Q9I3K3
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