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Structure of immunity protein tplei of T6SS from pseudomonas aeruginosa complexed with "L" peptide

Analyse Structure of immunity protein tplei of T6SS from pseudomonas aeruginosa… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5H7Y
Type: protein
Length: 303 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: Q9I3K3, Q9I3K2
Pockets: 4 · best druggability 0.40

Structure

x-ray diffraction · 2 distinct chains · 25% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	278	20% helix, 43% strand	Q9I3K3
B	Uncharacterized protein	protein	25	80% helix, 0% strand	Q9I3K2

Pockets

4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	61	0.40	0.80	15	empty
2	96	0.36	0.75	18	empty
3	83	0.35	0.75	15	empty
4	56	0.32	0.77	16	empty

Interfaces

1 interface between chains.

A–B · 1203 Å² buried · 17 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

5H7Y · Structure of immunity protein TplEi of T6SS from Pseudomonas aeruginosa complexed with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9I3K3
Every structure of UniProt Q9I3K2
Elsewhere: RCSB PDB 5H7Y · PDBe 5H7Y · UniProt Q9I3K3 · UniProt Q9I3K2

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