Research workbench
Structure of transferase mutant-C23S,C199S
Analyse Structure of transferase mutant-C23S,C199S in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5H5Y
- Type
- protein
- Length
- 564 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-lee encoded effector protein nleb
- UniProt
- A0A0D7C3R7
- Pockets
- 5 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Non-lee encoded effector protein nleb | protein | 286 | 40% helix, 20% strand | A0A0D7C3R7 |
| B | Non-lee encoded effector protein nleb | protein | 278 | 39% helix, 21% strand | A0A0D7C3R7 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 273 | 0.63 | 0.80 | 38 | empty |
| 2 | 372 | 0.62 | 0.78 | 38 | empty |
| 3 | 218 | 0.55 | 0.78 | 35 | empty |
| 4 | 160 | 0.45 | 0.76 | 21 | empty |
| 5 | 53 | 0.25 | 0.72 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 433 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 5H5Y · Structure of Transferase mutant-C23S,C199S · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D7C3R7
- Elsewhere: RCSB PDB 5H5Y · PDBe 5H5Y · UniProt A0A0D7C3R7
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