Research workbench
X-ray structure of padr-like transcription factor from bacteroid fragilis
Analyse X-ray structure of padr-like transcription factor from bacteroid fragilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5H20
- Type
- protein
- Length
- 103 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative padr-family transcriptional regulatory protein
- UniProt
- Q5LC36
- Ligands
- GLC, PO4
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative padr-family transcriptional regulatory protein | protein | 103 | 61% helix, 13% strand | Q5LC36 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · chains A
- PO4 · Phosphate ion · ion · 3 copies · chains A
- IPA · Isopropyl alcohol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5H20 · X-ray structure of PadR-like Transcription factor from bacteroid fragilis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5LC36
- Elsewhere: RCSB PDB 5H20 · PDBe 5H20 · UniProt Q5LC36
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