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Crystal structure of an ADP-ribosylating toxin beca from C. perfringens
Analyse Crystal structure of an ADP-ribosylating toxin beca from C. perfringens in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5H03
- Type
- protein
- Length
- 417 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Binary enterotoxin of clostridium perfringens component a
- UniProt
- X5I2D7
- Pockets
- 5 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Binary enterotoxin of clostridium perfringens component a | protein | 417 | 38% helix, 26% strand | X5I2D7 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 337 | 0.62 | 0.78 | 47 | empty |
| 2 | 255 | 0.49 | 0.74 | 34 | empty |
| 3 | 165 | 0.48 | 0.77 | 26 | empty |
| 4 | 60 | 0.30 | 0.75 | 15 | empty |
| 5 | 54 | 0.27 | 0.74 | 13 | empty |
Compared structures
- 5H03 · Crystal structure of an ADP-ribosylating toxin BECa from C. perfringens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt X5I2D7
- Elsewhere: RCSB PDB 5H03 · PDBe 5H03 · UniProt X5I2D7
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