Research workbench
Crystal structure of catalytic domain of protein O-mannosyl kinase in ligand-free form
Analyse Crystal structure of catalytic domain of protein O-mannosyl kinase in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5GZ8
- Type
- protein
- Length
- 272 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein O-mannose kinase
- EC
- 2.7.1.-
- UniProt
- Q3TUA9
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein O-mannose kinase (EC 2.7.1.-) | protein | 272 | 39% helix, 19% strand | Q3TUA9 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 335 | 0.63 | 0.79 | 38 | empty |
| 2 | 59 | 0.27 | 0.73 | 15 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 5GZ8 · Crystal structure of catalytic domain of Protein O-mannosyl Kinase in ligand-free form · the same entry in another collection · chain A against A, TM-score 1.00
- Q3TUA9 · AlphaFold monomer V2.0 prediction for protein O-mannose kinase (Q3TUA9) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3TUA9
- Elsewhere: RCSB PDB 5GZ8 · PDBe 5GZ8 · UniProt Q3TUA9
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