Research workbench

Structure of cicer arietinum 11S gloubulin

Analyse Structure of cicer arietinum 11S gloubulin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5GYL
Type: protein
Length: 1,141 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Legumin-like protein
Pockets: 13 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 12% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Legumin-like protein	protein	379	12% helix, 38% strand	—
B, C	Legumin-like protein	protein	381	12% helix, 39% strand	—

Pockets

13 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.73	0.99	17	empty
2	462	0.69	0.80	67	empty
3	350	0.65	0.80	46	empty
4	128	0.51	0.80	21	empty
5	74	0.44	0.81	17	empty

Interfaces

3 interfaces between chains.

A–C · 2830 Å² buried · 34 hydrogen bonds · protein-protein
B–C · 2780 Å² buried · 34 hydrogen bonds · protein-protein
A–B · 2741 Å² buried · 35 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

5GYL · Structure of Cicer arietinum 11S gloubulin · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5GYL · PDBe 5GYL

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.