Research workbench
Crystal structure of enzbleach xylanase V5N+V6N+K7R+K223R+K227R mutant
Analyse Crystal structure of enzbleach xylanase V5N+V6N+K7R+K223R+K227R mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5GYA
- Type
- protein
- Length
- 543 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endo-1,4-beta-xylanase
- EC
- 3.2.1.8
- Pockets
- 4 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 9% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endo-1,4-beta-xylanase (EC 3.2.1.8) | protein | 272 | 9% helix, 45% strand | — |
| B | Endo-1,4-beta-xylanase (EC 3.2.1.8) | protein | 271 | 10% helix, 45% strand | — |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 203 | 0.50 | 0.76 | 26 | empty |
| 2 | 239 | 0.49 | 0.75 | 33 | empty |
| 3 | 161 | 0.45 | 0.75 | 23 | empty |
| 4 | 92 | 0.34 | 0.74 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 374 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5GYA · Crystal structure of ENZbleach xylanase V5N+V6N+K7R+K223R+K227R mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5GYA · PDBe 5GYA
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