Research workbench
Crystal structure of asch domain from zymomonas mobilis
Analyse Crystal structure of asch domain from zymomonas mobilis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5GUS
- Type
- protein
- Length
- 287 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Helix-turn-helix domain-containing protein
- UniProt
- A0A0H3G0N3
- Ligands
- CL, SO4
- Pockets
- 1 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Helix-turn-helix domain-containing protein | protein | 143 | 31% helix, 36% strand | A0A0H3G0N3 |
| B | Helix-turn-helix domain-containing protein | protein | 144 | 31% helix, 36% strand | A0A0H3G0N3 |
Ligands and binding sites
- CL · Chloride ion · ion · 3 copies · chains A, B
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
- PE8 · 3,6,9,12,15,18,21-heptaoxatricosane-1,23-diol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1004 | 0.83 | 0.83 | 77 | PE8, CL |
Interfaces
1 interface between chains.
- A–B · 1124 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 5GUS · Crystal structure of ASCH domain from Zymomonas mobilis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3G0N3
- Elsewhere: RCSB PDB 5GUS · PDBe 5GUS · UniProt A0A0H3G0N3
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