Research workbench
Crystal structure of intermembrane space region of the ARC6-PDV2 complex
Analyse Crystal structure of intermembrane space region of the ARC6-PDV2 complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5GTB
- Type
- protein
- Length
- 153 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein accumulation and replication of chloroplasts 6, chloroplastic; Plastid division…
- UniProt
- Q9FIG9, Q9XII1
- Pockets
- 1 · best druggability 0.41
Structure
x-ray diffraction · 2 distinct chains · 27% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein accumulation and replication of chloroplasts 6, chloroplastic | protein | 130 | 32% helix, 47% strand | Q9FIG9 |
| B | Plastid division protein PDV2 | protein | 23 | 0% helix, 13% strand | Q9XII1 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 113 | 0.41 | 0.76 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1199 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
- 5GTB · crystal structure of intermembrane space region of the ARC6-PDV2 complex · the same entry in another collection · chain A against A, TM-score 1.00
- Q9FIG9 · AlphaFold monomer V2.0 prediction for protein accumulation and replication of… · a predicted model of the same protein · chain A against A, TM-score 0.98
- Q9XII1 · AlphaFold monomer V2.0 prediction for plastid division protein PDV2 (Q9XII1) · a predicted model of the same protein · chain B against A, TM-score 0.21
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9FIG9
- Every structure of UniProt Q9XII1
- Elsewhere: RCSB PDB 5GTB · PDBe 5GTB · UniProt Q9FIG9 · UniProt Q9XII1
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