Research workbench
Crystal structure of branching enzyme from cyanothece sp. atcc 51142
Analyse Crystal structure of branching enzyme from cyanothece sp. atcc 51142 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5GQU
- Type
- protein
- Length
- 755 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 1,4-alpha-glucan branching enzyme glgb
- EC
- 2.4.1.18
- UniProt
- B1WPM8
- Ligands
- MG
- Pockets
- 6 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 1,4-alpha-glucan branching enzyme glgb (EC 2.4.1.18) | protein | 755 | 28% helix, 28% strand | B1WPM8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 525 | 0.69 | 0.79 | 51 | empty |
| 2 | 246 | 0.63 | 0.82 | 29 | empty |
| 3 | 109 | 0.51 | 0.81 | 18 | empty |
| 4 | 171 | 0.47 | 0.76 | 32 | MG |
| 5 | 145 | 0.39 | 0.73 | 30 | empty |
Compared structures
- 5GQU · Crystal structure of branching enzyme from Cyanothece sp. ATCC 51142 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B1WPM8
- Elsewhere: RCSB PDB 5GQU · PDBe 5GQU · UniProt B1WPM8
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