Research workbench
Crystal structure of a specifier protein from arabidopsis thaliana
Analyse Crystal structure of a specifier protein from arabidopsis thaliana in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5GQT
- Type
- protein
- Length
- 470 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nitrile-specifier protein 1
- UniProt
- Q9SDM9
- Pockets
- 6 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 1% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nitrile-specifier protein 1 | protein | 470 | 1% helix, 50% strand | Q9SDM9 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 402 | 0.72 | 0.83 | 48 | empty |
| 2 | 79 | 0.57 | 0.87 | 20 | empty |
| 3 | 211 | 0.50 | 0.76 | 33 | empty |
| 4 | 173 | 0.48 | 0.77 | 35 | empty |
| 5 | 70 | 0.41 | 0.80 | 22 | empty |
Compared structures
- 5GQT · Crystal structure of a specifier Protein from Arabidopsis thaliana · the same entry in another collection · chain A against A, TM-score 1.00
- Q9SDM9 · AlphaFold monomer V2.0 prediction for nitrile-specifier protein 1 (Q9SDM9) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9SDM9
- Elsewhere: RCSB PDB 5GQT · PDBe 5GQT · UniProt Q9SDM9
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