Research workbench
Porcine parvovirus capsid
Analyse Porcine parvovirus capsid in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1K3V
- Type
- protein
- Length
- 542 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein VP2
- UniProt
- P18546
- Pockets
- 8 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein VP2 | protein | 542 | 9% helix, 27% strand | P18546 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 446 | 0.57 | 0.74 | 36 | empty |
| 2 | 287 | 0.55 | 0.76 | 41 | empty |
| 3 | 212 | 0.51 | 0.76 | 30 | empty |
| 4 | 188 | 0.47 | 0.75 | 26 | empty |
| 5 | 131 | 0.46 | 0.77 | 21 | empty |
Compared structures
- 1K3V · Porcine Parvovirus Capsid · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P18546
- Elsewhere: RCSB PDB 1K3V · PDBe 1K3V · UniProt P18546
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