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Crystal structure of CCP1 mutant

Analyse Crystal structure of CCP1 mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5GPK
Type: protein
Length: 413 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative nucleosome assembly protein C36B7.08C
UniProt: Q9HGN2
Pockets: 1 · best druggability 0.76

Structure

x-ray diffraction · 2 distinct chains · 45% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative nucleosome assembly protein C36B7.08C	protein	206	46% helix, 18% strand	Q9HGN2
B	Putative nucleosome assembly protein C36B7.08C	protein	207	43% helix, 19% strand	Q9HGN2

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	854	0.76	0.79	85	empty

Interfaces

1 interface between chains.

A–B · 1639 Å² buried · 4 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 7 modified (engineered).

Compared structures

5GPK · Crystal structure of Ccp1 mutant · the same entry in another collection · chain A against A, TM-score 1.00
Q9HGN2 · AlphaFold monomer V2.0 prediction for putative nucleosome assembly protein C36B7.08C… · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9HGN2
Elsewhere: RCSB PDB 5GPK · PDBe 5GPK · UniProt Q9HGN2

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