Research workbench

Methylation at position 32 of tRNA catalyzed by trmj alters oxidative stress response in pseudomonas aeruiginosa

Analyse Methylation at position 32 of tRNA catalyzed by trmj alters oxidative stress… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5GMB
Type: protein
Length: 171 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TRNA (CYTIDINE/URIDINE-2'-O-)-methyltransferase trmj
EC: 2.1.1.200
UniProt: A0A072ZPM2
Pockets: 1 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TRNA (CYTIDINE/URIDINE-2'-O-)-methyltransferase trmj (EC 2.1.1.200)	protein	171	43% helix, 18% strand	A0A072ZPM2

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	103	0.73	0.95	24	empty

Compared structures

5GMB · Methylation at position 32 of tRNA catalyzed by TrmJ alters oxidative stress response in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A072ZPM2
Elsewhere: RCSB PDB 5GMB · PDBe 5GMB · UniProt A0A072ZPM2

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.