Research workbench

MSMEG RIMP

Analyse MSMEG RIMP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5GL6
Type: protein
Length: 338 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ribosome maturation factor rimp
UniProt: A0QVM3
Pockets: 2 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 28% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Ribosome maturation factor rimp	protein	169	28% helix, 37% strand	A0QVM3

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	613	0.62	0.74	65	empty
2	74	0.32	0.75	22	empty

Interfaces

1 interface between chains.

A–B · 306 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

5GL6 · Msmeg rimP · the same entry in another collection · chain A against A, TM-score 1.00
A0QVM3 · AlphaFold monomer V2.0 prediction for ribosome maturation factor rimp (A0QVM3) · a predicted model of the same protein · chain A against A, TM-score 0.55

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0QVM3
Elsewhere: RCSB PDB 5GL6 · PDBe 5GL6 · UniProt A0QVM3

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