Research workbench
Structure a of group II intron complexed with its reverse transcriptase
Analyse Structure a of group II intron complexed with its reverse transcriptase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5G2Y
- Type
- RNA
- Length
- 630 nucleotides
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Group II intron
- EC
- 2.7.7.49
- Pockets
- 20 · best druggability 0.79
Structure
electron microscopy · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Group II intron (EC 2.7.7.49) | rna | 630 | — | — |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 856 | 0.79 | 0.83 | 67 | empty |
| 2 | 969 | 0.79 | 0.82 | 65 | empty |
| 3 | 863 | 0.74 | 0.79 | 46 | empty |
| 4 | 980 | 0.73 | 0.78 | 50 | empty |
| 5 | 1064 | 0.73 | 0.77 | 58 | empty |
Compared structures
- 5G2Y · Structure a of Group II Intron Complexed with its Reverse Transcriptase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5G2Y · PDBe 5G2Y
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