Research workbench
Type IV-like pilin TTHA1219 from thermus thermophilus
Analyse Type IV-like pilin TTHA1219 from thermus thermophilus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5G24
- Type
- protein
- Length
- 394 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Type-IV like pilin TTHA1219
- UniProt
- Q5SIZ5
- Pockets
- 3 · best druggability 0.58
Structure
x-ray diffraction · 2 distinct chains · 16% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Type-IV like pilin TTHA1219 | protein | 200 | 17% helix, 40% strand | Q5SIZ5 |
| B | Type-IV like pilin TTHA1219 | protein | 194 | 15% helix, 41% strand | Q5SIZ5 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 231 | 0.58 | 0.79 | 30 | empty |
| 2 | 192 | 0.50 | 0.77 | 19 | empty |
| 3 | 103 | 0.42 | 0.77 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1617 Ų buried · 19 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 5G24 · Type IV-like pilin TTHA1219 from Thermus thermophilus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SIZ5
- Elsewhere: RCSB PDB 5G24 · PDBe 5G24 · UniProt Q5SIZ5
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