Research workbench
Crystal structure of a dinb family error prone DNA polymerase from sulfolobus solfataricus
Analyse Crystal structure of a dinb family error prone DNA polymerase from sulfolobus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1K1Q
- Type
- protein
- Length
- 674 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dbh protein
- UniProt
- P96022
- Pockets
- 3 · best druggability 0.53
Structure
x-ray diffraction · 2 distinct chains · 39% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dbh protein | protein | 333 | 38% helix, 19% strand | P96022 |
| B | Dbh protein | protein | 341 | 40% helix, 22% strand | P96022 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 143 | 0.53 | 0.80 | 19 | empty |
| 2 | 123 | 0.50 | 0.80 | 19 | empty |
| 3 | 104 | 0.36 | 0.74 | 25 | empty |
Compared structures
- 1K1Q · Crystal Structure of a DinB Family Error Prone DNA Polymerase from Sulfolobus solfataricus · the same entry in another collection · chain A against A, TM-score 1.00
- P96022 · AlphaFold monomer V2.0 prediction for DNA polymerase IV (P96022) · a predicted model of the same protein · chain B against A, TM-score 0.75
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P96022
- Elsewhere: RCSB PDB 1K1Q · PDBe 1K1Q · UniProt P96022
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