Research workbench
Structure of tectonin 2 from laccaria bicolor in complex with 2-O- methyl-methyl-seleno-beta-L-fucopyranoside
Analyse Structure of tectonin 2 from laccaria bicolor in complex with 2-O… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5FSB
- Type
- protein
- Length
- 449 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tectonin 2
- UniProt
- B0CZL6
- Ligands
- 6YR, MG, SO4, BO3
- Pockets
- 3 · best druggability 0.44
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tectonin 2 | protein | 226 | 0% helix, 46% strand | B0CZL6 |
| B | Tectonin 2 | protein | 223 | 0% helix, 47% strand | B0CZL6 |
Ligands and binding sites
- 6YR · methyl 1-seleno-2-O-methyl-beta-L-fucopyranoside · ligand · 11 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 2 copies · chains A
- BO3 · Boric acid · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.44 | 0.76 | 25 | empty |
| 2 | 87 | 0.36 | 0.76 | 17 | empty |
| 3 | 75 | 0.34 | 0.76 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 996 Ų buried · 27 hydrogen bonds · protein-protein
Compared structures
- 5FSB · Structure of tectonin 2 from laccaria bicolor in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0CZL6
- Elsewhere: RCSB PDB 5FSB · PDBe 5FSB · UniProt B0CZL6
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