Research workbench
Structure of the in vitro assembled bacteriophage PHI6 polymerase complex
Analyse Structure of the in vitro assembled bacteriophage PHI6 polymerase complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5FJ5
- Type
- protein
- Length
- 1,522 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Major inner protein P1
- UniProt
- P11126
- Pockets
- 20 · best druggability 0.82
Structure
electron microscopy · 1 distinct chain · 42% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Major inner protein P1 | protein | 761 | 42% helix, 3% strand | P11126 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 574 | 0.82 | 0.88 | 68 | empty |
| 2 | 142 | 0.79 | 0.96 | 32 | empty |
| 3 | 146 | 0.78 | 0.95 | 34 | empty |
| 4 | 111 | 0.78 | 0.97 | 24 | empty |
| 5 | 474 | 0.78 | 0.86 | 47 | empty |
Interfaces
1 interface between chains.
- A–B · 1341 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 5FJ5 · Structure of the in vitro assembled bacteriophage phi6 polymerase complex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11126
- Elsewhere: RCSB PDB 5FJ5 · PDBe 5FJ5 · UniProt P11126
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