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Crystal structure of coiled coil domain of pawr

Analyse Crystal structure of coiled coil domain of pawr in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5FIY
Type: protein
Length: 469 residues
Chains: 7
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Prkc apoptosis WT1 regulator protein
UniProt: Q62627
Ligands: K
Pockets: 2 · best druggability 0.39

Structure

x-ray diffraction · 4 distinct chains · 95% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C	Prkc apoptosis WT1 regulator protein	protein	78	95% helix, 0% strand	Q62627
B, E	Prkc apoptosis WT1 regulator protein	protein	78	96% helix, 0% strand	Q62627
D	Prkc apoptosis WT1 regulator protein	protein	77	95% helix, 0% strand	Q62627
F, G	Prkc apoptosis WT1 regulator protein	protein	40	90% helix, 0% strand	Q62627

Ligands and binding sites

K · Potassium ion · metal · 18 copies · chains A, B, C, D, F, G

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	133	0.39	0.73	16	empty
2	118	0.38	0.74	17	empty

Interfaces

9 interfaces between chains.

A–B · 2195 Å² buried · 17 hydrogen bonds · protein-protein
C–D · 2128 Å² buried · 17 hydrogen bonds · protein-protein
F–G · 979 Å² buried · 12 hydrogen bonds · protein-protein
B–C · 299 Å² buried · 6 hydrogen bonds · protein-protein
A–E · 244 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 19 modified (engineered).

Compared structures

5FIY · crystal structure of coiled coil domain of PAWR · the same entry in another collection · chain F against F, TM-score 1.00
Q62627 · AlphaFold monomer V2.0 prediction for prkc apoptosis WT1 regulator protein (Q62627) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q62627
Elsewhere: RCSB PDB 5FIY · PDBe 5FIY · UniProt Q62627

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